References and Helpful Links

Here we are providing the links the we included in our presentations and some additional ones that may be useful for understanding the topics covered in this training.

We have also put together this cheatsheet with some highlights of code you will use over the course of the training.

Git and GitHub

• GitHub Documentation - official documentation for everything GitHub related
  
• GitHub Skills - interactive modules to learn how to use GitHub
  
• Official GitHub Training Manual - provides guidance for how to use GitHub for code development (English and Japanese versions available)
  
• Connecting to GitHub - how to connect GitHub with your local computer

Codespaces

• Codespaces Overview - a high-level overview of what codespaces is
  
• Quickstart for GitHub Codespaces - how to get started quickly with Codespaces
  
• Codespace Templates - pre-made Codespace templates you can use/build off

VS Code

• Download VS Code
  
• Getting Started with VS Code
  
• Using Git Source Control in VS Code
  
• R in VS Code
  
• Better Graphics Viewer for R
  
• radian R Console

Reproducible Environments

• renv - website for the R package
• Introduction to renv - introduces the basics of a renv workflow
  
• Using renv in GitHub Actions - how to use renv in automatic workflows like GitHub Actions

Script-Based Analyses

Shiny

Quarto

• revealjs slidecraft: check out these examples by Emil Hvitfeldt
• Quarto guide
• Get started with Quarto