Welcome to ISC Open Science Workshop

January 2025

Introductions

Nicholas
Ducharme-Barth

Meg Oshima

Workshop Materials

  • All presentations can be found on the workshop website.
    • https://moshima-pifsc.github.io/2025-01-ISC-OpenScienceTraining
  • Code can be found in the workshop repository.
    • https://github.com/MOshima-PIFSC/2025-01-ISC-OpenScienceTraining/r-code

Important

Make sure you have created a GitHub account before we start.

Why Open Science?

  • Standardized workflows and efficiency
  • Improve and support collaboration
  • Ensure our science is truly reproducible
  • Provide tools for sharing and communicating our work

Topics we will cover

  • GitHub for collaboration
  • Codespaces, VS Code, and reproducible R environments
  • Script-based model development
  • Creating Shiny apps
  • Code review with GitHub
  • Creating reproducible reports and presentations
  • Creating websites to share results

Let’s get started!